STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf40aPRP40 pre-mRNA processing factor 40 homolog A. (783 aa)    
Predicted Functional Partners:
LOC103381306
RNA binding motif protein 25a.
   
 0.918
LOC103380890
RNA binding motif protein 25b.
   
 0.918
LOC103391650
Splicing factor 1.
   
 0.838
ccar1
Cell division cycle and apoptosis regulator 1.
   
  0.837
htt
Huntingtin.
   
 0.769
LOC103386831
Uncharacterized protein.
   
  0.768
LOC103385498
RNA binding motif protein 39b.
   
  0.768
srrm1
Serine/arginine repetitive matrix 1.
   
 0.760
mtrex
Mtr4 exosome RNA helicase.
   
  0.717
ENSCSEP00000027635
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 0.713
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.