STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nolc1Nucleolar and coiled-body phosphoprotein 1. (1047 aa)    
Predicted Functional Partners:
nop56
NOP56 ribonucleoprotein homolog.
   
 
 0.982
fbl
Fibrillarin.
   
 
 0.976
dkc1
Dyskeratosis congenita 1, dyskerin.
   
 
 0.975
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.972
rsl1d1
Ribosomal L1 domain containing 1.
   
 
 0.950
polr1b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.874
trub1
TruB pseudouridine (psi) synthase family member 1.
   
 
 0.872
cebpz
CCAAT enhancer binding protein zeta.
   
   0.854
polr1a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.844
ENSCSEP00000016523
LTV1 ribosome biogenesis factor.
   
  
 0.824
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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