Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIL12584.130S ribosomal protein S8; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)    
Predicted Functional Partners:
AIL12576.1
30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
AIL12579.1
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
AIL12580.1
50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
AIL12582.1
50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
AIL12583.1
30S ribosomal protein S14; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
AIL12586.1
50S ribosomal protein L18; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
AIL12587.1
30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
AIL12593.1
30S ribosomal protein S11; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
rpsJ
30S ribosomal protein S10; NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.998
AIL12571.1
50S ribosomal protein L4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.998
Your Current Organism:
Paracaedimonas acanthamoebae
NCBI taxonomy Id: 244581
Other names: C. Paracaedimonas acanthamoebae, Caedibacter acanthamoebae, Candidatus Caedibacter acanthamoebae, Candidatus Paracaedimonas acanthamoebae
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