Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIL13586.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)    
Predicted Functional Partners:
AIL13587.1
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.993
AIL13588.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.956
AIL13589.1
Transcription termination factor Rho; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.827
AIL12915.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.802
AIL13592.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.774
AIL12493.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.764
AIL12263.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.653
AIL12703.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.651
AIL13590.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.633
AIL13227.1
DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.624
Your Current Organism:
Paracaedimonas acanthamoebae
NCBI taxonomy Id: 244581
Other names: C. Paracaedimonas acanthamoebae, Caedibacter acanthamoebae, Candidatus Caedibacter acanthamoebae, Candidatus Paracaedimonas acanthamoebae
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