Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_000757605_02424 | rne | GCA_000757605_02424 | GCA_000757605_01945 | Nucleotide-binding protein. | Ribonuclease E. | 0.968 |
bamD | rne | GCA_000757605_01553 | GCA_000757605_01945 | Outer membrane protein assembly factor BamD. | Ribonuclease E. | 0.613 |
cshA | dnaK | GCA_000757605_01239 | GCA_000757605_02331 | DEAD-box ATP-dependent RNA helicase CshA. | Chaperone protein DnaK. | 0.460 |
cshA | eno | GCA_000757605_01239 | GCA_000757605_01050 | DEAD-box ATP-dependent RNA helicase CshA. | Enolase. | 0.952 |
cshA | hscA | GCA_000757605_01239 | GCA_000757605_02038 | DEAD-box ATP-dependent RNA helicase CshA. | Chaperone protein HscA. | 0.460 |
cshA | pnp | GCA_000757605_01239 | GCA_000757605_02365 | DEAD-box ATP-dependent RNA helicase CshA. | Polyribonucleotide nucleotidyltransferase. | 0.997 |
cshA | rne | GCA_000757605_01239 | GCA_000757605_01945 | DEAD-box ATP-dependent RNA helicase CshA. | Ribonuclease E. | 0.981 |
cshA | rnpA | GCA_000757605_01239 | GCA_000757605_01929 | DEAD-box ATP-dependent RNA helicase CshA. | Ribonuclease P protein component. | 0.509 |
cshA | topA_1 | GCA_000757605_01239 | GCA_000757605_01316 | DEAD-box ATP-dependent RNA helicase CshA. | DNA topoisomerase 1. | 0.639 |
dnaK | cshA | GCA_000757605_02331 | GCA_000757605_01239 | Chaperone protein DnaK. | DEAD-box ATP-dependent RNA helicase CshA. | 0.460 |
dnaK | eno | GCA_000757605_02331 | GCA_000757605_01050 | Chaperone protein DnaK. | Enolase. | 0.915 |
dnaK | pnp | GCA_000757605_02331 | GCA_000757605_02365 | Chaperone protein DnaK. | Polyribonucleotide nucleotidyltransferase. | 0.455 |
dnaK | rhlE | GCA_000757605_02331 | GCA_000757605_01141 | Chaperone protein DnaK. | ATP-dependent RNA helicase RhlE. | 0.460 |
dnaK | rne | GCA_000757605_02331 | GCA_000757605_01945 | Chaperone protein DnaK. | Ribonuclease E. | 0.825 |
eno | cshA | GCA_000757605_01050 | GCA_000757605_01239 | Enolase. | DEAD-box ATP-dependent RNA helicase CshA. | 0.952 |
eno | dnaK | GCA_000757605_01050 | GCA_000757605_02331 | Enolase. | Chaperone protein DnaK. | 0.915 |
eno | hscA | GCA_000757605_01050 | GCA_000757605_02038 | Enolase. | Chaperone protein HscA. | 0.925 |
eno | pnp | GCA_000757605_01050 | GCA_000757605_02365 | Enolase. | Polyribonucleotide nucleotidyltransferase. | 0.983 |
eno | rhlE | GCA_000757605_01050 | GCA_000757605_01141 | Enolase. | ATP-dependent RNA helicase RhlE. | 0.952 |
eno | rne | GCA_000757605_01050 | GCA_000757605_01945 | Enolase. | Ribonuclease E. | 0.990 |
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