STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM51853.1Hypothetical protein. (909 aa)    
Predicted Functional Partners:
SEN07000.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
  
 0.991
SEM50394.1
Hypothetical protein.
  
 0.980
SEN55623.1
Regulatory protein, luxR family.
  
 0.974
SEM73212.1
PAS domain S-box-containing protein.
 
 0.972
SEN53453.1
Signal transduction histidine kinase.
 
 
0.970
SEM76964.1
PAS domain S-box-containing protein.
 
0.965
SEN17156.1
PAS domain S-box-containing protein.
 
0.964
SEM59516.1
Signal transduction histidine kinase.
 
0.953
SEN70643.1
GAF domain-containing protein.
 
0.953
SEM92246.1
Signal transduction histidine kinase.
  
0.944
Your Current Organism:
Loktanella fryxellensis
NCBI taxonomy Id: 245187
Other names: CIP 108323, DSM 16213, JCM 21635, L. fryxellensis, LMG 22007, LMG:22007, Loktanella fryxellensis Van Trappen et al. 2004, NBRC 102485
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.