Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEM59045.1 | SEM59102.1 | SAMN04488003_10228 | SAMN04488003_10230 | Putative ABC transport system permease protein. | Hypothetical protein. | 0.956 |
SEM59045.1 | SEM59133.1 | SAMN04488003_10228 | SAMN04488003_10231 | Putative ABC transport system permease protein. | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | 0.891 |
SEM59102.1 | SEM59045.1 | SAMN04488003_10230 | SAMN04488003_10228 | Hypothetical protein. | Putative ABC transport system permease protein. | 0.956 |
SEM59102.1 | SEM59133.1 | SAMN04488003_10230 | SAMN04488003_10231 | Hypothetical protein. | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | 0.911 |
SEM59133.1 | SEM59045.1 | SAMN04488003_10231 | SAMN04488003_10228 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | Putative ABC transport system permease protein. | 0.891 |
SEM59133.1 | SEM59102.1 | SAMN04488003_10231 | SAMN04488003_10230 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | Hypothetical protein. | 0.911 |
SEM59133.1 | SEM77144.1 | SAMN04488003_10231 | SAMN04488003_104140 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | PhoD-like phosphatase. | 0.742 |
SEM59133.1 | SEN09997.1 | SAMN04488003_10231 | SAMN04488003_10946 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | Phosphate ABC transporter substrate-binding protein, PhoT family. | 0.637 |
SEM59133.1 | SEN11888.1 | SAMN04488003_10231 | SAMN04488003_10995 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | Protein translocase subunit secB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.899 |
SEM59133.1 | SEN75632.1 | SAMN04488003_10231 | SAMN04488003_1333 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | pRiA4b ORF-3-like protein. | 0.886 |
SEM59133.1 | SEN78872.1 | SAMN04488003_10231 | SAMN04488003_13616 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | Hypothetical protein. | 0.664 |
SEM59133.1 | dnaK | SAMN04488003_10231 | SAMN04488003_10942 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.860 |
SEM59133.1 | secA | SAMN04488003_10231 | SAMN04488003_10948 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.904 |
SEM59133.1 | tig | SAMN04488003_10231 | SAMN04488003_101146 | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.896 |
SEM77144.1 | SEM59133.1 | SAMN04488003_104140 | SAMN04488003_10231 | PhoD-like phosphatase. | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | 0.742 |
SEN09997.1 | SEM59133.1 | SAMN04488003_10946 | SAMN04488003_10231 | Phosphate ABC transporter substrate-binding protein, PhoT family. | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | 0.637 |
SEN09997.1 | dnaK | SAMN04488003_10946 | SAMN04488003_10942 | Phosphate ABC transporter substrate-binding protein, PhoT family. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.420 |
SEN09997.1 | secA | SAMN04488003_10946 | SAMN04488003_10948 | Phosphate ABC transporter substrate-binding protein, PhoT family. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.709 |
SEN09997.1 | tig | SAMN04488003_10946 | SAMN04488003_101146 | Phosphate ABC transporter substrate-binding protein, PhoT family. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.482 |
SEN11888.1 | SEM59133.1 | SAMN04488003_10995 | SAMN04488003_10231 | Protein translocase subunit secB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | Alkaline phosphatase; Belongs to the alkaline phosphatase family. | 0.899 |
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