STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM70181.1Autotransporter secretion inner membrane protein TamB. (1596 aa)    
Predicted Functional Partners:
SEM70207.1
Autotransporter secretion outer membrane protein TamA.
 
 
 0.998
SEM70154.1
Hemerythrin HHE cation binding domain-containing protein.
 
     0.671
SEM84873.1
Hypothetical protein.
 
     0.582
SEN03773.1
Protein of unknown function.
  
     0.568
SEM51825.1
Flagellar motor switch protein FliM.
  
     0.546
SEM41367.1
Hypothetical protein.
  
     0.539
SEN05938.1
Hypothetical protein.
  
     0.527
SEN37701.1
Cell division and transport-associated protein TolA.
  
     0.527
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.506
SEN67023.1
Hypothetical protein.
  
     0.504
Your Current Organism:
Loktanella fryxellensis
NCBI taxonomy Id: 245187
Other names: CIP 108323, DSM 16213, JCM 21635, L. fryxellensis, LMG 22007, LMG:22007, Loktanella fryxellensis Van Trappen et al. 2004, NBRC 102485
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.