Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEM66402.1 | SEM85491.1 | SAMN04488003_10342 | SAMN04488003_105145 | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein. | 0.549 |
SEM66402.1 | SEN09158.1 | SAMN04488003_10342 | SAMN04488003_10917 | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | Glutamate synthase (NADPH) large subunit. | 0.567 |
SEM85491.1 | SEM66402.1 | SAMN04488003_105145 | SAMN04488003_10342 | MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein. | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.549 |
SEM85491.1 | SEN09158.1 | SAMN04488003_105145 | SAMN04488003_10917 | MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein. | Glutamate synthase (NADPH) large subunit. | 0.432 |
SEM85491.1 | dnaE2 | SAMN04488003_105145 | SAMN04488003_105144 | MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein. | Error-prone DNA polymerase, DnaE-like; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.486 |
SEN09158.1 | SEM66402.1 | SAMN04488003_10917 | SAMN04488003_10342 | Glutamate synthase (NADPH) large subunit. | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.567 |
SEN09158.1 | SEM85491.1 | SAMN04488003_10917 | SAMN04488003_105145 | Glutamate synthase (NADPH) large subunit. | MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein. | 0.432 |
dnaE2 | SEM85491.1 | SAMN04488003_105144 | SAMN04488003_105145 | Error-prone DNA polymerase, DnaE-like; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein. | 0.486 |