STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEM98924.1Sorbitol ABC transporter membrane protein. (276 aa)    
Predicted Functional Partners:
SEM98896.1
Sorbitol ABC transporter membrane protein.
 
  0.997
SEM98951.1
Sorbitol ABC transporter ATP-binding protein.
 
  0.997
SEM98855.1
Sorbitol-binding protein /mannitol-binding protein.
 
  0.996
SEM99012.1
Mannitol 2-dehydrogenase.
 
  
 0.928
SEM98982.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.888
SEN46127.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
  0.834
SEN48724.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
  0.804
SEM93170.1
Extracellular solute-binding protein.
  
  0.797
SEN48829.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
  
  0.759
SEN58688.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
  0.757
Your Current Organism:
Loktanella fryxellensis
NCBI taxonomy Id: 245187
Other names: CIP 108323, DSM 16213, JCM 21635, L. fryxellensis, LMG 22007, LMG:22007, Loktanella fryxellensis Van Trappen et al. 2004, NBRC 102485
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