Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEM60027.1 | SEM62790.1 | SAMN04488003_10261 | SAMN04488003_102169 | Chlorophyll synthase. | Chlorophyllide a reductase subunit Y. | 0.988 |
SEM60027.1 | SEM62815.1 | SAMN04488003_10261 | SAMN04488003_102170 | Chlorophyll synthase. | Chlorophyllide a reductase subunit Z. | 0.990 |
SEM60027.1 | SEM96294.1 | SAMN04488003_10261 | SAMN04488003_10741 | Chlorophyll synthase. | 3-vinyl bacteriochlorophyllide hydratase. | 0.995 |
SEM60027.1 | SEM96485.1 | SAMN04488003_10261 | SAMN04488003_10746 | Chlorophyll synthase. | Mg-protoporphyrin IX methyltransferase. | 0.891 |
SEM60027.1 | SEM96526.1 | SAMN04488003_10261 | SAMN04488003_10747 | Chlorophyll synthase. | MFS transporter, BCD family, chlorophyll transporter. | 0.870 |
SEM60027.1 | SEM96549.1 | SAMN04488003_10261 | SAMN04488003_10748 | Chlorophyll synthase. | Photosynthetic reaction center H subunit. | 0.865 |
SEM60027.1 | SEM96580.1 | SAMN04488003_10261 | SAMN04488003_10749 | Chlorophyll synthase. | PH domain-containing protein. | 0.805 |
SEM60027.1 | bchB | SAMN04488003_10261 | SAMN04488003_10743 | Chlorophyll synthase. | Ferredoxin protochlorophyllide reductase subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.996 |
SEM60027.1 | bchL | SAMN04488003_10261 | SAMN04488003_10745 | Chlorophyll synthase. | Ferredoxin protochlorophyllide reductase subunit L; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. | 0.973 |
SEM60027.1 | bchN | SAMN04488003_10261 | SAMN04488003_10742 | Chlorophyll synthase. | Ferredoxin protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.990 |
SEM62790.1 | SEM60027.1 | SAMN04488003_102169 | SAMN04488003_10261 | Chlorophyllide a reductase subunit Y. | Chlorophyll synthase. | 0.988 |
SEM62790.1 | SEM62815.1 | SAMN04488003_102169 | SAMN04488003_102170 | Chlorophyllide a reductase subunit Y. | Chlorophyllide a reductase subunit Z. | 0.997 |
SEM62790.1 | SEM96294.1 | SAMN04488003_102169 | SAMN04488003_10741 | Chlorophyllide a reductase subunit Y. | 3-vinyl bacteriochlorophyllide hydratase. | 0.975 |
SEM62790.1 | SEM96485.1 | SAMN04488003_102169 | SAMN04488003_10746 | Chlorophyllide a reductase subunit Y. | Mg-protoporphyrin IX methyltransferase. | 0.776 |
SEM62790.1 | SEM96526.1 | SAMN04488003_102169 | SAMN04488003_10747 | Chlorophyllide a reductase subunit Y. | MFS transporter, BCD family, chlorophyll transporter. | 0.791 |
SEM62790.1 | SEM96549.1 | SAMN04488003_102169 | SAMN04488003_10748 | Chlorophyllide a reductase subunit Y. | Photosynthetic reaction center H subunit. | 0.781 |
SEM62790.1 | SEM96580.1 | SAMN04488003_102169 | SAMN04488003_10749 | Chlorophyllide a reductase subunit Y. | PH domain-containing protein. | 0.774 |
SEM62790.1 | bchB | SAMN04488003_102169 | SAMN04488003_10743 | Chlorophyllide a reductase subunit Y. | Ferredoxin protochlorophyllide reductase subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.967 |
SEM62790.1 | bchL | SAMN04488003_102169 | SAMN04488003_10745 | Chlorophyllide a reductase subunit Y. | Ferredoxin protochlorophyllide reductase subunit L; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. | 0.974 |
SEM62790.1 | bchN | SAMN04488003_102169 | SAMN04488003_10742 | Chlorophyllide a reductase subunit Y. | Ferredoxin protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.980 |
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