STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN06801.1Ca2+-binding protein, RTX toxin-related. (685 aa)    
Predicted Functional Partners:
SEN06665.1
ABC transporter transmembrane region.
 
   0.824
SEN06766.1
HlyD family secretion protein.
 
    0.818
SEN39859.1
Hint domain-containing protein.
 
 
  0.720
SEN32481.1
Biotin-lipoyl like.
  
    0.698
SEN06732.1
ABC transporter.
 
   0.692
SEN32441.1
Type I secretion system ABC transporter, PrtD family.
  
   0.681
SEN33697.1
Hemolysin-type calcium-binding repeat-containing protein.
  
 
0.652
SEN06698.1
ABC transporter.
 
   0.628
SEM84500.1
Membrane fusion protein, adhesin transport system.
  
    0.593
SEM84540.1
ATP-binding cassette, subfamily C, LapB.
 
  
 0.524
Your Current Organism:
Loktanella fryxellensis
NCBI taxonomy Id: 245187
Other names: CIP 108323, DSM 16213, JCM 21635, L. fryxellensis, LMG 22007, LMG:22007, Loktanella fryxellensis Van Trappen et al. 2004, NBRC 102485
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