STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN16077.1Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). (200 aa)    
Predicted Functional Partners:
SEN74833.1
Putative ABC transport system permease protein.
   
 
 0.933
SEN88992.1
Lipoprotein-releasing system permease protein.
 
 
 
 0.895
SEM48442.1
N-acetylmuramoyl-L-alanine amidase.
    
   0.894
SEM59045.1
Putative ABC transport system permease protein.
   
 
 0.869
SEM66194.1
Putative ABC transport system permease protein.
   
 
 0.869
lptD
LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
   
 0.802
SEM59073.1
Putative ABC transport system ATP-binding protein.
   
 
 0.800
SEM66226.1
Putative ABC transport system ATP-binding protein.
   
 
 0.800
SEN74805.1
Putative ABC transport system ATP-binding protein.
   
 
 0.800
SEN78784.1
Hypothetical protein.
   
 
 0.800
Your Current Organism:
Loktanella fryxellensis
NCBI taxonomy Id: 245187
Other names: CIP 108323, DSM 16213, JCM 21635, L. fryxellensis, LMG 22007, LMG:22007, Loktanella fryxellensis Van Trappen et al. 2004, NBRC 102485
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