STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN20116.1Uncharacterized conserved protein, tellurite resistance protein B (TerB) family. (144 aa)    
Predicted Functional Partners:
rlmJ
23S rRNA (adenine2030-N6)-methyltransferase; Specifically methylates the adenine in position 2030 of 23S rRNA.
       0.698
SEN20086.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
       0.590
SEN20219.1
Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family.
 
     0.548
SEN20052.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
     0.486
SEN16432.1
Hypothetical protein.
  
     0.456
SEN84146.1
Transcriptional regulator, MarR family.
  
     0.447
SEM48191.1
Protein of unknown function.
  
     0.404
Your Current Organism:
Loktanella fryxellensis
NCBI taxonomy Id: 245187
Other names: CIP 108323, DSM 16213, JCM 21635, L. fryxellensis, LMG 22007, LMG:22007, Loktanella fryxellensis Van Trappen et al. 2004, NBRC 102485
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.