Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEM41854.1 | polA | SAMN04488003_10133 | SAMN04488003_10783 | ATP-dependent DNA helicase RecG. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.700 |
SEM41854.1 | ruvA | SAMN04488003_10133 | SAMN04488003_11474 | ATP-dependent DNA helicase RecG. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.613 |
SEM41854.1 | ruvB | SAMN04488003_10133 | SAMN04488003_11472 | ATP-dependent DNA helicase RecG. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.592 |
SEM41854.1 | ruvC | SAMN04488003_10133 | SAMN04488003_11475 | ATP-dependent DNA helicase RecG. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.557 |
SEN03420.1 | ruvC | SAMN04488003_10847 | SAMN04488003_11475 | Magnesium chelatase family protein. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.580 |
SEN37784.1 | SEN37813.1 | SAMN04488003_11470 | SAMN04488003_11471 | acyl-CoA thioester hydrolase. | Hypothetical protein. | 0.862 |
SEN37784.1 | SEN37869.1 | SAMN04488003_11470 | SAMN04488003_11473 | acyl-CoA thioester hydrolase. | Hypothetical protein. | 0.560 |
SEN37784.1 | ruvA | SAMN04488003_11470 | SAMN04488003_11474 | acyl-CoA thioester hydrolase. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.729 |
SEN37784.1 | ruvB | SAMN04488003_11470 | SAMN04488003_11472 | acyl-CoA thioester hydrolase. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.728 |
SEN37784.1 | ruvC | SAMN04488003_11470 | SAMN04488003_11475 | acyl-CoA thioester hydrolase. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.729 |
SEN37784.1 | tolQ | SAMN04488003_11470 | SAMN04488003_11469 | acyl-CoA thioester hydrolase. | Cell division and transport-associated protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.783 |
SEN37813.1 | SEN37784.1 | SAMN04488003_11471 | SAMN04488003_11470 | Hypothetical protein. | acyl-CoA thioester hydrolase. | 0.862 |
SEN37813.1 | SEN37869.1 | SAMN04488003_11471 | SAMN04488003_11473 | Hypothetical protein. | Hypothetical protein. | 0.550 |
SEN37813.1 | ruvA | SAMN04488003_11471 | SAMN04488003_11474 | Hypothetical protein. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.725 |
SEN37813.1 | ruvB | SAMN04488003_11471 | SAMN04488003_11472 | Hypothetical protein. | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.725 |
SEN37813.1 | ruvC | SAMN04488003_11471 | SAMN04488003_11475 | Hypothetical protein. | Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.725 |
SEN37813.1 | tolQ | SAMN04488003_11471 | SAMN04488003_11469 | Hypothetical protein. | Cell division and transport-associated protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.692 |
SEN37869.1 | SEN37784.1 | SAMN04488003_11473 | SAMN04488003_11470 | Hypothetical protein. | acyl-CoA thioester hydrolase. | 0.560 |
SEN37869.1 | SEN37813.1 | SAMN04488003_11473 | SAMN04488003_11471 | Hypothetical protein. | Hypothetical protein. | 0.550 |
SEN37869.1 | SEN37962.1 | SAMN04488003_11473 | SAMN04488003_11476 | Hypothetical protein. | Uncharacterized conserved protein YjiS, DUF1127 family. | 0.445 |
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