STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN42247.1Uncharacterized membrane protein. (167 aa)    
Predicted Functional Partners:
SEN42835.1
Hypothetical protein.
  
     0.722
SEM53771.1
Hypothetical protein.
  
     0.716
SEN22535.1
Predicted secreted protein.
  
     0.671
SEN36690.1
Hypothetical protein.
  
     0.655
SEM80853.1
Invasion protein IalB, involved in pathogenesis.
  
     0.632
SEM67520.1
Protein of unknown function.
  
     0.606
SEN69153.1
Hypoxia induced protein conserved region.
  
     0.604
SEN36589.1
Surfeit locus 1 family protein.
  
     0.583
SEN42158.1
Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
      0.567
SEN12865.1
HemY protein.
  
     0.509
Your Current Organism:
Loktanella fryxellensis
NCBI taxonomy Id: 245187
Other names: CIP 108323, DSM 16213, JCM 21635, L. fryxellensis, LMG 22007, LMG:22007, Loktanella fryxellensis Van Trappen et al. 2004, NBRC 102485
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.