STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (274 aa)    
Predicted Functional Partners:
SEN44870.1
Cupin domain-containing protein.
 
     0.852
SEN44797.1
Short chain dehydrogenase.
  
 
  0.819
SEN44929.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.794
SEN82564.1
2-deoxy-D-gluconate 3-dehydrogenase.
  
 
  0.768
SEN44896.1
TRAP transporter, DctM subunit.
       0.727
SEN58475.1
Uncharacterized conserved protein YaeQ, suppresses RfaH defect.
   
    0.662
uxaC
Glucuronate isomerase.
 
  
 0.658
SEN58543.1
Unsaturated rhamnogalacturonyl hydrolase.
 
   
 0.607
SEN44964.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
     0.598
SEN45033.1
Transcriptional regulator, GntR family.
 
    0.435
Your Current Organism:
Loktanella fryxellensis
NCBI taxonomy Id: 245187
Other names: CIP 108323, DSM 16213, JCM 21635, L. fryxellensis, LMG 22007, LMG:22007, Loktanella fryxellensis Van Trappen et al. 2004, NBRC 102485
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