STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN64184.1Phage tail tape measure protein, lambda family. (808 aa)    
Predicted Functional Partners:
SEN64124.1
Phage conserved hypothetical protein BR0599.
 
     0.900
SEN64057.1
Putative phage tail protein.
 
     0.900
SEN64317.1
Hypothetical protein.
 
     0.895
SEN64259.1
Hypothetical protein.
 
     0.894
SEN64093.1
Putative phage cell wall peptidase, NlpC/P60 family.
 
  
 0.887
SEN64016.1
Protein of unknown function.
 
  
 0.886
SEN64344.1
Hypothetical protein.
 
     0.883
SEN64161.1
TIGR02217 family protein.
 
    0.847
SEN64413.1
Hypothetical protein.
 
     0.827
SEN64450.1
Hypothetical protein.
 
     0.826
Your Current Organism:
Loktanella fryxellensis
NCBI taxonomy Id: 245187
Other names: CIP 108323, DSM 16213, JCM 21635, L. fryxellensis, LMG 22007, LMG:22007, Loktanella fryxellensis Van Trappen et al. 2004, NBRC 102485
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