STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN86738.1Hypothetical protein. (478 aa)    
Predicted Functional Partners:
SEN86713.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
 
    0.648
SEN76026.1
Phage tail tape measure protein, lambda family.
  
    0.629
SEN64184.1
Phage tail tape measure protein, lambda family.
  
    0.595
SEN64259.1
Hypothetical protein.
  
     0.538
SEN75992.1
Hypothetical protein.
  
     0.524
SEN64317.1
Hypothetical protein.
  
     0.510
SEN86762.1
MerR HTH family regulatory protein.
       0.501
SEN86786.1
Ca-activated chloride channel family protein.
       0.501
SEN75962.1
Hypothetical protein.
  
     0.497
SEN86687.1
WYL domain-containing protein.
 
     0.459
Your Current Organism:
Loktanella fryxellensis
NCBI taxonomy Id: 245187
Other names: CIP 108323, DSM 16213, JCM 21635, L. fryxellensis, LMG 22007, LMG:22007, Loktanella fryxellensis Van Trappen et al. 2004, NBRC 102485
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.