STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB34313.1Transcriptional regulator, TetR family. (221 aa)    
Predicted Functional Partners:
bamD
Beta-barrel assembly machine subunit BamD.
       0.778
SKB34329.1
DNA-directed RNA polymerase, subunit K/omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
       0.634
SKB43124.1
Protein of unknown function.
  
     0.620
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
 
     0.613
SKB61951.1
Activator of Hsp90 ATPase homolog 1-like protein.
  
     0.595
SKB64516.1
Hypothetical protein.
  
     0.566
SKB34294.1
tRNA A37 threonylcarbamoyladenosine dehydratase.
       0.558
SKB34304.1
TatD DNase family protein.
       0.558
SKB48112.1
Hypothetical protein.
  
     0.545
SKB49649.1
Hypothetical protein.
  
     0.500
Your Current Organism:
Chryseobacterium balustinum
NCBI taxonomy Id: 246
Other names: ATCC 33487, C. balustinum, CIP 103103, DSM 16775, Flavobacterium balustinum, IFO 15053, JCM 21074, LMG 8329, LMG:8329, NBRC 15053, NCTC 11212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.