STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB49944.1Type I restriction enzyme M protein. (542 aa)    
Predicted Functional Partners:
SKB49920.1
Restriction endonuclease S subunit.
 
 
 0.997
SKB93758.1
Type I restriction enzyme, S subunit.
 
 0.990
SKB49957.1
Type I restriction enzyme, R subunit.
 
 
 0.982
SKB49833.1
Hypothetical protein.
 
   
 0.945
SKB49840.1
Restriction system-associated AAA family ATPase.
 
     0.944
SKB93797.1
Type I restriction enzyme, R subunit.
 
 
 0.926
SKB74552.1
Type I restriction enzyme R protein N terminus (HSDR_N).
  
 
 0.678
uvrB
Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
    
 
 0.678
SKB35475.1
Uncharacterized conserved protein.
  
    0.630
SKB99951.1
AAA domain-containing protein.
  
  
 0.523
Your Current Organism:
Chryseobacterium balustinum
NCBI taxonomy Id: 246
Other names: ATCC 33487, C. balustinum, CIP 103103, DSM 16775, Flavobacterium balustinum, IFO 15053, JCM 21074, LMG 8329, LMG:8329, NBRC 15053, NCTC 11212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.