STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB55698.1N-acetylmuramoyl-L-alanine amidase. (193 aa)    
Predicted Functional Partners:
SKB41227.1
N-acetylmuramoyl-L-alanine amidase.
  
  
 
0.690
SKB69365.1
Outer membrane lipoprotein-sorting protein.
    
   0.683
SKB81096.1
Outer membrane lipoprotein carrier protein.
    
   0.683
lptC
LPS export ABC transporter protein LptC.
   
 0.596
SKB55709.1
Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
       0.536
SKB37659.1
Membrane associated serine protease, rhomboid family.
   
   0.535
SKB34821.1
Membrane associated serine protease, rhomboid family.
   
   0.535
SKB80734.1
Hypothetical protein.
   
   0.535
SKC08370.1
Membrane associated serine protease, rhomboid family.
   
   0.535
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
 
 0.518
Your Current Organism:
Chryseobacterium balustinum
NCBI taxonomy Id: 246
Other names: ATCC 33487, C. balustinum, CIP 103103, DSM 16775, Flavobacterium balustinum, IFO 15053, JCM 21074, LMG 8329, LMG:8329, NBRC 15053, NCTC 11212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.