STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnpA-2REP element-mobilizing transposase RayT. (154 aa)    
Predicted Functional Partners:
SKC05922.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
   
  
 0.614
SKC06145.1
Integrase/recombinase XerC; Belongs to the 'phage' integrase family.
   
  
 0.614
SKC07011.1
Integrase/recombinase XerD; Belongs to the 'phage' integrase family.
   
  
 0.614
SKC07104.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
   
  
 0.614
SKC14302.1
Integrase/recombinase XerD; Belongs to the 'phage' integrase family.
   
  
 0.614
SKB69688.1
3-hydroxyacyl-CoA dehydrogenase.
       0.543
SKB69719.1
acetyl-CoA acyltransferase.
       0.516
ureC
Urease subunit alpha.
    
   0.461
SKB69676.1
DNA-binding transcriptional regulator, MarR family.
       0.416
Your Current Organism:
Chryseobacterium balustinum
NCBI taxonomy Id: 246
Other names: ATCC 33487, C. balustinum, CIP 103103, DSM 16775, Flavobacterium balustinum, IFO 15053, JCM 21074, LMG 8329, LMG:8329, NBRC 15053, NCTC 11212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.