STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB75287.1TonB-linked outer membrane protein, SusC/RagA family. (1113 aa)    
Predicted Functional Partners:
SKB75299.1
SusD family protein.
 
 
   0.957
SKB75259.1
Protein of unknown function.
 
     0.949
SKB75247.1
Histidine kinase.
 
     0.783
SKC04293.1
SusD family protein.
 
 
   0.755
SKB75305.1
Two component transcriptional regulator, LytTR family.
 
     0.732
SKC11460.1
Hypothetical protein.
  
 
   0.653
SKB38421.1
Antitoxin component YwqK of the YwqJK toxin-antitoxin module.
  
     0.628
SKC00175.1
Starch-binding associating with outer membrane.
 
 
   0.559
SKB85945.1
Starch-binding associating with outer membrane.
 
 
   0.544
SKB88208.1
SusD family protein.
 
 
   0.508
Your Current Organism:
Chryseobacterium balustinum
NCBI taxonomy Id: 246
Other names: ATCC 33487, C. balustinum, CIP 103103, DSM 16775, Flavobacterium balustinum, IFO 15053, JCM 21074, LMG 8329, LMG:8329, NBRC 15053, NCTC 11212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.