STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC06188.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (226 aa)    
Predicted Functional Partners:
SKC14696.1
PAS domain-containing protein.
 
 0.989
SKC14956.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
 
 0.987
SKC15090.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
 
 0.987
SKC11448.1
PAS domain S-box-containing protein.
  
 0.985
SKC06199.1
Signal transduction histidine kinase.
 
  0.965
SKB75524.1
Signal transduction histidine kinase.
 
0.951
SKC02276.1
PAS domain S-box-containing protein.
 0.944
SKC02361.1
Signal transduction histidine kinase.
 
  0.933
SKB48780.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
  0.930
SKB34784.1
Signal transduction histidine kinase.
 
  0.927
Your Current Organism:
Chryseobacterium balustinum
NCBI taxonomy Id: 246
Other names: ATCC 33487, C. balustinum, CIP 103103, DSM 16775, Flavobacterium balustinum, IFO 15053, JCM 21074, LMG 8329, LMG:8329, NBRC 15053, NCTC 11212
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