Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKB53941.1 | SKB71001.1 | SAMN05421800_10340 | SAMN05421800_106200 | O-succinylbenzoic acid--CoA ligase. | Hypothetical protein. | 0.943 |
SKB53941.1 | SKC09576.1 | SAMN05421800_10340 | SAMN05421800_13029 | O-succinylbenzoic acid--CoA ligase. | Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family. | 0.455 |
SKB53941.1 | menD | SAMN05421800_10340 | SAMN05421800_13030 | O-succinylbenzoic acid--CoA ligase. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | 0.843 |
SKB71001.1 | SKB53941.1 | SAMN05421800_106200 | SAMN05421800_10340 | Hypothetical protein. | O-succinylbenzoic acid--CoA ligase. | 0.943 |
SKB71001.1 | SKC09576.1 | SAMN05421800_106200 | SAMN05421800_13029 | Hypothetical protein. | Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family. | 0.499 |
SKC00948.1 | SKC09576.1 | SAMN05421800_12019 | SAMN05421800_13029 | Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. | Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family. | 0.488 |
SKC09576.1 | SKB53941.1 | SAMN05421800_13029 | SAMN05421800_10340 | Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family. | O-succinylbenzoic acid--CoA ligase. | 0.455 |
SKC09576.1 | SKB71001.1 | SAMN05421800_13029 | SAMN05421800_106200 | Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family. | Hypothetical protein. | 0.499 |
SKC09576.1 | SKC00948.1 | SAMN05421800_13029 | SAMN05421800_12019 | Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family. | Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family. | 0.488 |
SKC09576.1 | menD | SAMN05421800_13029 | SAMN05421800_13030 | Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | 0.549 |
menD | SKB53941.1 | SAMN05421800_13030 | SAMN05421800_10340 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | O-succinylbenzoic acid--CoA ligase. | 0.843 |
menD | SKC09576.1 | SAMN05421800_13030 | SAMN05421800_13029 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. | Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family. | 0.549 |