Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDK37633.1 | SDK73482.1 | SAMN05660337_0258 | SAMN05660337_1035 | ATP-grasp domain-containing protein. | Uracil permease. | 0.823 |
SDK37633.1 | carA | SAMN05660337_0258 | SAMN05660337_2743 | ATP-grasp domain-containing protein. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.990 |
SDK37633.1 | pyrB | SAMN05660337_0258 | SAMN05660337_0501 | ATP-grasp domain-containing protein. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.944 |
SDK37633.1 | pyrC | SAMN05660337_0258 | SAMN05660337_0502 | ATP-grasp domain-containing protein. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.877 |
SDK37633.1 | pyrC-2 | SAMN05660337_0258 | SAMN05660337_3292 | ATP-grasp domain-containing protein. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate. | 0.872 |
SDK37633.1 | pyrD | SAMN05660337_0258 | SAMN05660337_3283 | ATP-grasp domain-containing protein. | Dihydroorotate dehydrogenase (NAD+) catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate. | 0.949 |
SDK37633.1 | pyrE | SAMN05660337_0258 | SAMN05660337_3293 | ATP-grasp domain-containing protein. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.880 |
SDK37633.1 | pyrF | SAMN05660337_0258 | SAMN05660337_2722 | ATP-grasp domain-containing protein. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.865 |
SDK37633.1 | pyrR | SAMN05660337_0258 | SAMN05660337_0112 | ATP-grasp domain-containing protein. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant. | 0.838 |
SDK73482.1 | SDK37633.1 | SAMN05660337_1035 | SAMN05660337_0258 | Uracil permease. | ATP-grasp domain-containing protein. | 0.823 |
SDK73482.1 | carA | SAMN05660337_1035 | SAMN05660337_2743 | Uracil permease. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.926 |
SDK73482.1 | carB | SAMN05660337_1035 | SAMN05660337_3297 | Uracil permease. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.823 |
SDK73482.1 | pyrB | SAMN05660337_1035 | SAMN05660337_0501 | Uracil permease. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.960 |
SDK73482.1 | pyrC | SAMN05660337_1035 | SAMN05660337_0502 | Uracil permease. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.938 |
SDK73482.1 | pyrD | SAMN05660337_1035 | SAMN05660337_3283 | Uracil permease. | Dihydroorotate dehydrogenase (NAD+) catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate. | 0.848 |
SDK73482.1 | pyrE | SAMN05660337_1035 | SAMN05660337_3293 | Uracil permease. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.923 |
SDK73482.1 | pyrF | SAMN05660337_1035 | SAMN05660337_2722 | Uracil permease. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.929 |
SDK73482.1 | pyrR | SAMN05660337_1035 | SAMN05660337_0112 | Uracil permease. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant. | 0.952 |
carA | SDK37633.1 | SAMN05660337_2743 | SAMN05660337_0258 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | ATP-grasp domain-containing protein. | 0.990 |
carA | SDK73482.1 | SAMN05660337_2743 | SAMN05660337_1035 | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | Uracil permease. | 0.926 |
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