STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK48767.1DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain. (453 aa)    
Predicted Functional Partners:
SDL09268.1
Iron-sulfur cluster-binding protein.
    
   0.807
SDK48742.1
Threonine/homoserine/homoserine lactone efflux protein.
 
     0.779
SDL32624.1
Chorismate mutase.
    
 0.769
SDL53333.1
Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.646
SDK82020.1
Indolepyruvate decarboxylase.
   
 0.641
SDL08487.1
FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase.
  
 
 0.624
trpA
Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
   
 
 0.607
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
  
 0.604
SDL32677.1
Prephenate dehydrogenase.
    
 0.604
SDK51716.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
  
 
 0.602
Your Current Organism:
Desulfovibrio ferrireducens
NCBI taxonomy Id: 246191
Other names: D. ferrireducens, DSM 16995, Desulfovibrio ferrireducens Vandieken et al. 2006, JCM 12925, delta proteobacterium 61, strain 61
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