STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK82433.1Extracellular protein. (276 aa)    
Predicted Functional Partners:
SDK82400.1
Hypothetical protein; Manually curated.
   
 0.977
SDK82472.1
Curli production assembly/transport component CsgG.
 
     0.944
SDK82206.1
Uncharacterized membrane protein.
 
     0.936
SDK82240.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.926
SDK82364.1
Tetratricopeptide repeat-containing protein.
 
     0.891
SDK82307.1
GAF domain-containing protein.
 
     0.784
SDK82341.1
Sporulation related domain-containing protein; Manually curated.
       0.782
SDK82273.1
HEAT repeat-containing protein.
       0.713
SDK82168.1
UDP-glucose 4-epimerase.
       0.638
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.529
Your Current Organism:
Desulfovibrio ferrireducens
NCBI taxonomy Id: 246191
Other names: D. ferrireducens, DSM 16995, Desulfovibrio ferrireducens Vandieken et al. 2006, JCM 12925, delta proteobacterium 61, strain 61
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.