STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK90142.1Hypothetical protein. (105 aa)    
Predicted Functional Partners:
SDK42146.1
NifU-like protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
 
 0.990
SDK42110.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
 
  
 0.887
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
     
 0.874
SDL17425.1
Hypothetical protein.
  
 
 0.850
SDL31381.1
Nitrogen fixation protein NifU.
  
  
 0.835
SDL64214.1
Response regulator receiver domain-containing protein.
  
 
 
 0.833
SDL17395.1
Fe-S cluster assembly ATP-binding protein.
  
 
 0.830
SDK78312.1
Calcineurin-like phosphoesterase.
    
 
 0.797
SDK43222.1
HEAT-like repeat-containing protein.
    
 
 0.790
SDL40625.1
HEAT repeat.
    
 
 0.790
Your Current Organism:
Desulfovibrio ferrireducens
NCBI taxonomy Id: 246191
Other names: D. ferrireducens, DSM 16995, Desulfovibrio ferrireducens Vandieken et al. 2006, JCM 12925, delta proteobacterium 61, strain 61
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.