STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL06205.1Putative iron-only hydrogenase system regulator. (80 aa)    
Predicted Functional Partners:
SDK43435.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.949
SDK48650.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.949
SDK73187.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.949
SDL06178.1
Iron-only hydrogenase maturation protein HydG.
 
     0.933
SDK43403.1
Iron complex transport system substrate-binding protein.
  
 0.925
SDK48623.1
Iron complex transport system substrate-binding protein.
  
 0.925
SDK73134.1
Iron complex transport system substrate-binding protein.
  
 0.925
SDL06092.1
Iron-only hydrogenase maturation protein HydF.
 
     0.880
SDL06121.1
Biotin synthase.
 
  
 0.879
SDL06256.1
Ferredoxin hydrogenase large subunit.
 
     0.828
Your Current Organism:
Desulfovibrio ferrireducens
NCBI taxonomy Id: 246191
Other names: D. ferrireducens, DSM 16995, Desulfovibrio ferrireducens Vandieken et al. 2006, JCM 12925, delta proteobacterium 61, strain 61
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