STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL22672.1Two-component system, NtrC family, response regulator HydG. (452 aa)    
Predicted Functional Partners:
SDL22701.1
Two-component system, NtrC family, sensor histidine kinase HydH.
 
 0.975
SDK92681.1
PAS domain S-box-containing protein.
 
 0.910
SDL60682.1
Adenylate cyclase, class 3.
  
 0.882
SDL34917.1
Hypothetical protein.
  
 0.874
SDK30145.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.822
SDK88473.1
PAS domain S-box-containing protein.
 
 0.822
SDL61800.1
PAS domain S-box-containing protein.
 
 0.820
SDK42375.1
PAS domain S-box-containing protein.
 
0.817
SDK72005.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.814
SDK93083.1
PAS domain S-box-containing protein.
 
 0.806
Your Current Organism:
Desulfovibrio ferrireducens
NCBI taxonomy Id: 246191
Other names: D. ferrireducens, DSM 16995, Desulfovibrio ferrireducens Vandieken et al. 2006, JCM 12925, delta proteobacterium 61, strain 61
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.