STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL49466.1Carboxypeptidase controlling helical cell shape. (580 aa)    
Predicted Functional Partners:
SDL49529.1
Murein L,D-transpeptidase YafK.
 
   
 0.939
SDL49500.1
Hypothetical protein.
       0.804
SDL49434.1
Sugar phosphate isomerase/epimerase.
       0.703
SDL47686.1
Hypothetical protein.
  
     0.674
bioA
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily.
    
 0.658
SDL39084.1
Uncharacterized conserved protein.
 
   
 0.642
SDK44447.1
Calcineurin-like phosphoesterase.
  
     0.624
SDL40625.1
HEAT repeat.
  
     0.612
SDL38252.1
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
    
  0.609
SDK57026.1
Xaa-Pro aminopeptidase.
    
 0.579
Your Current Organism:
Desulfovibrio ferrireducens
NCBI taxonomy Id: 246191
Other names: D. ferrireducens, DSM 16995, Desulfovibrio ferrireducens Vandieken et al. 2006, JCM 12925, delta proteobacterium 61, strain 61
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.