Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SDL52962.1SagB-type dehydrogenase domain-containing protein. (449 aa)    
Predicted Functional Partners:
SDL52930.1
Ribosomal protein S12 methylthiotransferase accessory factor.
 
  
 0.972
SDK38590.1
Uroporphyrinogen III methyltransferase / synthase.
  
 
 0.804
SDL52998.1
Putative peptide zinc metalloprotease protein.
       0.773
SDL07334.1
ABC-2 type transport system permease protein.
  
  
 0.684
SDL52897.1
NHLP leader peptide domain-containing protein.
 
     0.648
SDL08576.1
Lactoylglutathione lyase family protein.
  
  
 0.632
SDK77154.1
YcaO-type kinase domain-containing protein.
  
  
 0.627
SDK41848.1
fatty-acyl-CoA synthase.
   
 
 0.621
SDK95776.1
Long-chain acyl-CoA synthetase.
   
 
 0.621
SDL53333.1
Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
 
   
 0.621
Your Current Organism:
Desulfovibrio ferrireducens
NCBI taxonomy Id: 246191
Other names: D. ferrireducens, DSM 16995, Desulfovibrio ferrireducens Vandieken et al. 2006, JCM 12925, delta proteobacterium 61, strain 61
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