STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_0025Conserved hypothetical protein; Identified by similarity to GB:BAC70657.1. (293 aa)    
Predicted Functional Partners:
CHY_0026
Putative DNA ligase, ATP-dependent; Identified by match to protein family HMM PF01068; match to protein family HMM PF01331.
   
 0.995
ku
KU domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
  
 0.967
CHY_1797
Conserved hypothetical protein; Identified by similarity to GB:BAC70657.1.
  
  
 
0.908
CHY_0028
Hypothetical protein; Identified by Glimmer2; putative.
       0.559
CHY_0029
Putative membrane protein; Identified by similarity to SP:P31064; match to protein family HMM PF04143.
       0.425
CHY_0030
Conserved hypothetical protein; Identified by similarity to GB:AAP77896.1; match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family.
       0.425
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.