STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_0068Identified by match to protein family HMM PF00209; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (453 aa)    
Predicted Functional Partners:
CHY_0075
Amino acid carrier protein; Identified by similarity to SP:Q45068; match to protein family HMM PF01235; match to protein family HMM TIGR00835.
 
  
 0.542
dsdA
D-serine dehydratase; Identified by similarity to SP:P00926; match to protein family HMM PF00291; match to protein family HMM TIGR02035; Belongs to the serine/threonine dehydratase family. DsdA subfamily.
       0.523
CHY_0677
Transcriptional regulator, MerR family; Identified by match to protein family HMM PF00376; match to protein family HMM PF01381; match to protein family HMM PF07883.
  
 
 0.449
CHY_0119
Osmoregulated proline transporter; Identified by similarity to SP:O06493; match to protein family HMM PF00474; match to protein family HMM TIGR00813; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.404
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.