STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_0103HD domain protein; Identified by match to protein family HMM PF01966. (307 aa)    
Predicted Functional Partners:
CHY_1858
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
   0.972
CHY_0949
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
   0.961
CHY_0140
GGDEF domain protein; Identified by similarity to PIR:S76977; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
   0.888
CHY_2047
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
      0.834
CHY_2467
GGDEF domain protein; Identified by similarity to PIR:A72309; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
   0.752
CHY_0705
GGDEF domain protein; Identified by similarity to PIR:S76977; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
   0.745
CHY_0880
Response regulator/sensory box protein/GGDEF domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
   
 0.668
CHY_1906
Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
   
 0.628
CHY_0102
Ferritin; Iron-storage protein.
       0.572
CHY_0074
EAL domain protein; Identified by similarity to GB:AAP10909.1; match to protein family HMM PF00563.
  
  
 0.544
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.