STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_0160HDIG domain protein; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277. (442 aa)    
Predicted Functional Partners:
CHY_1858
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
   0.971
CHY_0949
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
   0.929
CHY_0140
GGDEF domain protein; Identified by similarity to PIR:S76977; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
   0.835
CHY_0161
Conserved hypothetical protein; Identified by similarity to GB:AAM23795.1.
 
     0.826
CHY_2047
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
      0.802
CHY_2467
GGDEF domain protein; Identified by similarity to PIR:A72309; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
   0.742
CHY_0705
GGDEF domain protein; Identified by similarity to PIR:S76977; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
   0.740
CHY_0880
Response regulator/sensory box protein/GGDEF domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
   
 0.683
CHY_1906
Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
   
 0.618
CHY_0159
Conserved hypothetical protein; Identified by similarity to GB:AAM23793.1.
 
     0.559
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.