STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_0293PIN domain protein; Identified by similarity to GB:AAM73469.1. (166 aa)    
Predicted Functional Partners:
CHY_0294
Conserved hypothetical protein; Identified by similarity to GB:AAM73468.1; match to protein family HMM PF06114.
    0.982
CHY_1721
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.590
CHY_0292
Site-specific recombinase, resolvase family.
       0.549
CHY_0295
Type II restriction endonuclease family protein; Identified by match to protein family HMM PF04471.
       0.484
csm5
CRISPR-associated RAMP protein, Csm5 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR01899.
  
     0.409
CHY_0296
Hypothetical protein; Identified by Glimmer2; putative.
       0.407
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.