STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_0446Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392. (123 aa)    
Predicted Functional Partners:
CHY_0448
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.966
CHY_0447
Putative membrane protein.
       0.791
CHY_0445
Conserved hypothetical protein; Identified by similarity to GB:AAM23723.1.
       0.785
CHY_0872
ABC transporter, ATP binding protein; Identified by similarity to PIR:H97301; match to protein family HMM PF00005.
  
  
 0.554
CHY_0900
Daunorubicin resistance ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01188.
  
  
 0.554
CHY_2246
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.554
CHY_2424
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  
 0.554
CHY_1014
Flagellar hook-basal body rod protein; Identified by similarity to SP:P23446; match to protein family HMM PF00460; match to protein family HMM PF06429.
   
    0.540
CHY_2184
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
  
 0.425
CHY_0444
Putative membrane protein.
     
 0.422
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.