STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_0942Hypothetical protein; Identified by Glimmer2; putative. (471 aa)    
Predicted Functional Partners:
CHY_2592
Conserved domain protein; Identified by similarity to OMNI:NTL03CP1354.
  
 
 0.680
CHY_2612
Conserved domain protein.
  
 
 0.680
CHY_0233
Putative cytochrome c; Identified by similarity to GP:3628767.
   
 
 0.647
CHY_0647
Hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.647
CHY_0945
Identified by match to protein family HMM PF00149.
  
  
 0.542
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.541
CHY_0943
Conserved hypothetical protein; Identified by similarity to PIR:C83656.
       0.514
CHY_0944
Conserved hypothetical protein; Identified by similarity to PIR:D83656.
       0.486
CHY_0946
Conserved hypothetical protein; Identified by similarity to PIR:E83947.
       0.486
CHY_0947
Conserved hypothetical protein; Identified by similarity to PIR:D83947.
       0.486
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.