STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cheDChemotaxis protein CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. (159 aa)    
Predicted Functional Partners:
CHY_1017
Chemotaxis protein CheC; Identified by similarity to SP:P40403; match to protein family HMM PF04509.
 
 0.999
CHY_1020
Flagellar motor switch protein; Identified by similarity to SP:P24073; match to protein family HMM PF01052; match to protein family HMM PF04509; match to protein family HMM TIGR02480.
 
 
 0.999
CHY_1296
Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.
 
  0.987
CHY_1023
Methyl-accepting chemotaxis protein; Identified by similarity to SP:P39215; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743.
 
  0.984
cheR1
Chemotaxis protein methyltransferase; Identified by similarity to SP:P31105; match to protein family HMM PF01739; match to protein family HMM PF03705.
 
  
 0.974
flhB
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
  
  
 0.952
CHY_1029
Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015.
 
  0.949
flhA
Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
  
  
 0.942
cheA1
Chemotaxis protein CheA; Identified by similarity to SP:P29072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194.
 
  
 0.939
CHY_1018
Chemotaxis response regulator; Identified by similarity to SP:P24072; match to protein family HMM PF00072.
 
    0.939
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.