STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_1237ABC1 family protein; Identified by similarity to PIR:A96904; match to protein family HMM PF03109. (527 aa)    
Predicted Functional Partners:
CHY_1217
Conserved hypothetical protein; Identified by similarity to GB:BAC14986.1.
 
     0.733
CHY_1238
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
       0.727
CHY_0896
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01BH2712.
 
     0.722
CHY_1236
Putative primosomal protein DnaI; Identified by similarity to SP:P06567.
       0.603
CHY_1234
Histidinol phosphate phosphatase family protein; Identified by similarity to SP:O34411; match to protein family HMM PF02811; match to protein family HMM TIGR01856; Belongs to the PHP hydrolase family. HisK subfamily.
       0.595
CHY_1235
DNA replication protein DnaD; Identified by similarity to SP:P39787; match to protein family HMM PF04271; match to protein family HMM TIGR01446.
       0.595
CHY_1233
Identified by match to protein family HMM PF02219; Belongs to the methylenetetrahydrofolate reductase family.
       0.447
hisIE
Histidine biosynthesis bifunctional protein HisIE; Identified by similarity to SP:O34912; match to protein family HMM PF01502; match to protein family HMM PF01503; In the N-terminal section; belongs to the PRA-CH family.
       0.431
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.