STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_1334Hypothetical protein; Identified by Glimmer2; putative. (51 aa)    
Predicted Functional Partners:
CHY_1335
Permease, cytosine/purines, uracil, thiamine, allantoin family; Identified by similarity to SP:P25525; match to protein family HMM PF02133.
       0.572
CHY_1336
Conserved hypothetical protein; Identified by match to protein family HMM PF06032.
       0.572
CHY_1331
Hypothetical protein; Identified by Glimmer2; putative.
       0.547
CHY_1332
Conserved hypothetical protein; Identified by similarity to PIR:AB1492; match to protein family HMM PF06032.
       0.547
CHY_1333
Putative sigma-54-dependent transcriptional regulator; Identified by similarity to SP:Q46802; match to protein family HMM PF00158; match to protein family HMM TIGR01199.
       0.547
CHY_1337
Identified by match to protein family HMM PF01968; match to protein family HMM PF05378.
       0.543
hyuE
Hydantoin racemase; Identified by similarity to SP:Q00924; match to protein family HMM PF01177.
       0.490
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.