STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_1386Conserved domain protein; Identified by similarity to GB:AAN37247.1. (125 aa)    
Predicted Functional Partners:
CHY_1383
Putative heme exporter protein CcmB; Identified by similarity to SP:P29960; match to protein family HMM PF03379.
       0.791
CHY_1385
Hypothetical protein; Identified by Glimmer2; putative.
       0.791
CHY_1387
Putative cytochrome c-type biogenesis protein CcmF; Identified by similarity to SP:P33927; match to protein family HMM PF01578.
       0.791
CHY_1384
Sodium ABC transporter, ATP-binding protein; Identified by similarity to SP:P46903; match to protein family HMM PF00005.
       0.783
CHY_1388
Putative cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
       0.748
CHY_1389
Hypothetical protein; Identified by Glimmer2; putative.
       0.742
CHY_1382
Putative heme exporter protein CcmC; Identified by similarity to SP:P30962; match to protein family HMM PF01578.
       0.675
CHY_1380
Hypothetical protein; Identified by Glimmer2; putative.
       0.635
CHY_1381
Hypothetical protein; Identified by Glimmer2; putative.
       0.635
CHY_1390
Conserved hypothetical protein; Identified by similarity to PIR:C69888; match to protein family HMM PF01053; match to protein family HMM PF06838.
       0.500
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.