Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CHY_1663Hypothetical protein; Identified by Glimmer2; putative. (100 aa)    
Predicted Functional Partners:
CHY_1661
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
CHY_1662
Putative prophage LambdaCh01, tail tape measure protein.
       0.773
CHY_1664
Conserved domain protein; Identified by similarity to OMNI:NTL01FN2063.
       0.773
CHY_1657
Hypothetical protein; Identified by Glimmer2; putative.
       0.757
CHY_1658
Hypothetical protein; Identified by Glimmer2; putative.
       0.757
CHY_1659
Hypothetical protein; Identified by Glimmer2; putative.
       0.757
CHY_1660
Hypothetical protein; Identified by Glimmer2; putative.
       0.757
CHY_1665
Conserved hypothetical protein; Identified by similarity to GB:BAC63640.1; match to protein family HMM TIGR02126.
       0.741
CHY_1666
Hypothetical protein; Identified by Glimmer2; putative.
       0.721
CHY_1667
Hypothetical protein; Identified by Glimmer2; putative.
       0.721
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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