STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_2000Conserved hypothetical protein; Identified by similarity to OMNI:AF2004. (163 aa)    
Predicted Functional Partners:
CHY_2001
Putative sporulation protein; Identified by similarity to SP:P49784.
       0.773
CHY_2002
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
CHY_2003
Putative sporulation protein; Identified by similarity to SP:P49782.
       0.768
CHY_2004
Putative sporulation protein; Identified by similarity to SP:P49781.
       0.762
CHY_2005
Putative sporulation protein; Identified by similarity to SP:P49780; match to protein family HMM PF06686.
       0.762
CHY_2006
Putative sporulation protein; Identified by similarity to SP:Q01368.
       0.745
CHY_2007
Putative sporulation protein; Identified by similarity to SP:Q01367.
       0.745
CHY_2008
KID repeat protein.
       0.529
oadA
Oxaloacetate decarboxylase, alpha subunit; Identified by similarity to SP:P13187; match to protein family HMM PF00364; match to protein family HMM PF00682; match to protein family HMM PF02436; match to protein family HMM TIGR00531.
       0.503
accC2
acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
       0.400
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.