STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_2002Hypothetical protein; Identified by Glimmer2; putative. (160 aa)    
Predicted Functional Partners:
CHY_2004
Putative sporulation protein; Identified by similarity to SP:P49781.
  
  
 0.997
CHY_2003
Putative sporulation protein; Identified by similarity to SP:P49782.
  
  
 0.975
CHY_2001
Putative sporulation protein; Identified by similarity to SP:P49784.
  
  
 0.967
CHY_2005
Putative sporulation protein; Identified by similarity to SP:P49780; match to protein family HMM PF06686.
  
  
 0.955
CHY_2006
Putative sporulation protein; Identified by similarity to SP:Q01368.
  
  
 0.944
CHY_2007
Putative sporulation protein; Identified by similarity to SP:Q01367.
  
  
 0.903
CHY_2000
Conserved hypothetical protein; Identified by similarity to OMNI:AF2004.
       0.773
oadA
Oxaloacetate decarboxylase, alpha subunit; Identified by similarity to SP:P13187; match to protein family HMM PF00364; match to protein family HMM PF00682; match to protein family HMM PF02436; match to protein family HMM TIGR00531.
       0.705
CHY_1997
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT1198; match to protein family HMM PF03780.
  
    0.561
CHY_2008
KID repeat protein.
       0.529
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.