STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_2017Xanthine dehydrogenase accessory factor-related protein; Identified by match to protein family HMM PF02625. (130 aa)    
Predicted Functional Partners:
CHY_2018
Conserved domain protein.
     0.977
coxM
Carbon monoxide dehydrogenase, medium subunit; Identified by similarity to SP:P19920; match to protein family HMM PF00941; match to protein family HMM PF03450.
 
  
 0.907
CHY_0691
2Fe-2S iron-sulfur cluster binding domain; Identified by similarity to SP:P19915; match to protein family HMM PF00111; match to protein family HMM PF01799.
 
  
 0.839
CHY_0694
Conserved hypothetical protein; Identified by similarity to SP:Q46808; similarity to GB:AAN69811.1.
 
  
 0.839
CHY_0693
Conserved domain protein; Identified by similarity to GB:AAO82275.1.
 
  
 0.716
CHY_2016
Uracil permease; Identified by similarity to SP:P33780; match to protein family HMM PF00860; match to protein family HMM TIGR00801.
       0.571
CHY_0621
Molybdopterin-binding domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
   
 0.507
CHY_2019
Identified by match to protein family HMM PF02040.
       0.494
dacA
Conserved hypothetical protein TIGR00159; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
     0.464
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.