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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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CHY_2139CRISPR-associated protein Cas6; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). (248 aa)    
Predicted Functional Partners:
csm3
CRISPR-associated RAMP protein, Csm3 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR02582.
 
   
 0.862
csm1
CRISPR-associated protein, Csm1 family; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR02578.
 
   
 0.856
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.823
csm4
CRISPR-associated RAMP protein, Csm4 family; Identified by match to protein family HMM TIGR01903.
 
   
 0.816
cas4
CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.
 
   
 0.816
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.809
cas3
CRISPR-associated helicase Cas3; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR01587; match to protein family HMM TIGR01596.
 
   
 0.808
cas5h
CRISPR-associated protein Cas5, Hmari subtype; Identified by match to protein family HMM TIGR02592; match to protein family HMM TIGR02593.
 
   
 0.789
csm5
CRISPR-associated RAMP protein, Csm5 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR01899.
 
     0.777
csh2
CRISPR-associated protein, Csh2 family; Identified by match to protein family HMM PF05107; match to protein family HMM TIGR01595; match to protein family HMM TIGR02590.
 
     0.751
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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